Molecular Visualizations
Molecular dynamics simulations and visualizations.
Image 1: My favourite and the most abundant protein on Earth, RubisCO visualized in Blender
Video 1: RubisCO active enzymatic site interaction animation.
Video 2: AF-P60995-F1 folding over to a more stable shape. 1s = 500 femto-seconds
Video 3: Pretty cool stuff! I took the Ubiquitin protein and progressively introduced genetic mutations by inserting a random tri-nucleotide repeat. Each mutagenesis cycle was then processed by the Alpha Fold model.
Video 4: Molecular dynamics simulation of interaction between the antigen-binding region from the monoclonal anti-lysozyme antibody and the antigen, hen egg white lysozyme.
Video 5: My first successful molecular simulation of a protein folding using the Gasteiger solver (which also considers hydrogen bonding). Protein used: AF-P60995-F1 (E. coli) short peptide seq